Signal peptide predictions
SEEK ID: https://sandbox10.fairdomhub.org/assays/52
Experimental assay
Projects: Test: An inventory of the aspergillus secretome
Investigation: Understanding the extracellular environment in Aspergillus niger
Study: In silico prediction
Assay position: 1
Assay type: Genomics
Technology type: ChIP-on-chip
Organisms: No organisms
Export PNG
Download
Creators and Submitter
Views: 17
Created: 3rd Mar 2025 at 16:10
Last updated: 7th Mar 2025 at 13:55
TagsThis item has not yet been tagged.
Related items
Projects: Test: An inventory of the aspergillus secretome, Workshop fair data station example, An inventory of the Aspergillus niger secretome, Test, PichiaTest, Project: An inventory of the Aspergillus niger secretome
Web page: Not specified
Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. We were able to improve the in silico inventory of Aspergillus niger secretory proteins by combining different gene-model predictions from neighbouring Aspergilli and thereby avoiding prediction conflicts associated with inaccurate gene-models. An experimental ...
Programme: IBISBA Workshop
Public web page: http://www.manchester.ac.uk
Start date: 1st Mar 2025
End date: 31st Dec 2028
Submitter: Munazah Andrabi
Investigation: Understanding the extracellular environment in ...
Assays: Signal peptide predictions
Secretome enriched fractions of A. niger N402 cultured under controlled conditions in defined synthetic media were analysed by high-throughput mass spectrometry
