Understanding the extracellular environment in Aspergillus niger

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SEEK ID: https://sandbox10.fairdomhub.org/investigations/4

Projects: Test: An inventory of the aspergillus secretome

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Creators and Submitter

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Munazah Andrabi
Jasper Koehorst

Submitter

Munazah Andrabi

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Views: 22

Created: 3rd Mar 2025 at 15:26

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Studies (4)
Assays (5)
Data files (4+1)
Samples (17+2)
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Munazah Andrabi

Projects: Default Project, Test: An inventory of the aspergillus secretome, An inventory of the Aspergillus niger secretome

Institutions: University of Manchester

Jasper Koehorst

Projects: Default Project, Workshop fair data station example, An inventory of the Aspergillus niger secretome

Institutions: WUR - Wageningen University & Research

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IBISBA Workshop

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Projects: Test: An inventory of the aspergillus secretome, Workshop fair data station example, An inventory of the Aspergillus niger secretome, Test, PichiaTest, Project: An inventory of the Aspergillus niger secretome

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Test: An inventory of the aspergillus secretome

Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. We were able to improve the in silico inventory of Aspergillus niger secretory proteins by combining different gene-model predictions from neighbouring Aspergilli and thereby avoiding prediction conflicts associated with inaccurate gene-models. An experimental ...

Programme: IBISBA Workshop

Public web page: http://www.manchester.ac.uk

Start date: 1st Mar 2025

End date: 31st Dec 2028

Organisms: Aspergillus niger

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Metabolic model analysis

Test: An inventory of the aspergillus secretome

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Munazah Andrabi

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