SEEK ID: https://sandbox10.fairdomhub.org/people/3
Location:
Netherlands
ORCID: Not specified
Joined: 26th Feb 2025
Expertise: Not specified
Tools: Not specified
Related items
- Programmes (1)
- Projects (3)
- Institutions (1)
- Investigations (2+1)
- Studies (1+1)
- Assays (17+17)
- Data files (42+42)
- Samples (14+14)
- Observation Units (7+7)
Projects: Test: An inventory of the aspergillus secretome, Workshop fair data station example, An inventory of the Aspergillus niger secretome, Test, PichiaTest, Project: An inventory of the Aspergillus niger secretome
Web page: Not specified
Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. We were able to improve the in silico inventory of Aspergillus niger secretory proteins by combining different gene-model predictions from neighbouring Aspergilli and thereby avoiding prediction conflicts associated with inaccurate gene-models. An experimental ...
Programme: IBISBA Workshop
Public web page: Not specified
Start date: 7th Mar 2025
End date: 7th Mar 2028
Organisms: Aspergillus niger
An example project for the workshop to show the result of a population by FAIR Data Station.
Programme: IBISBA Workshop
Public web page: Not specified
Organisms: Aspergillus niger
Investigation into optimizing micropollutant removal from wastewater treatment plant effluent using biological treatment and ozonation
Submitter: Jasper Koehorst
Studies: Optimizing condutions using bioreactors
Assays: Assay - Bac_9-16, Assay - Bac_9-16_II_sludge, Assay - Bac_9-16_sludge, Assay - Bac_9-17, Assay - Bac_9-18, Assay - Bac_9-19, Assay - Bac_9-20, Assay - Bac_9-23, Assay - Bac_9-24, Assay - Bac_9-26, Assay - Bac_9-27, Assay - Bac_9-30, Assay - Neg_PCR_QC2_lib-2021_0022, Assay - Neg_PCR_QC_lib-2021_0021, Assay - Neg_PCR_QC_lib-2021_0022, Assay - Neg_PCR_QC_lib-2021_0023, Assay - Neg_PCR_QC_lib-2021_0024
Snapshots: No snapshots
Submitter: Munazah Andrabi
Studies: Culture experiments, In silico prediction, Metabolic model analysis, Validation of the secretome of A. niger
Assays: Identify enzymes from spectra, Liquid chromatography tandem mass spectrometric, MS analysis, Obtain metabolic model, Signal peptide predictions
Snapshots: No snapshots
What type of bioreactors are best at removing organic matter from wastewater treatment plant effluent. And what conditions can optimize these processes
Submitter: Jasper Koehorst
Investigation: Synergies between biological and ozonisation pr...
Assays: Assay - Bac_9-16, Assay - Bac_9-16_II_sludge, Assay - Bac_9-16_sludge, Assay - Bac_9-17, Assay - Bac_9-18, Assay - Bac_9-19, Assay - Bac_9-20, Assay - Bac_9-23, Assay - Bac_9-24, Assay - Bac_9-26, Assay - Bac_9-27, Assay - Bac_9-30, Assay - Neg_PCR_QC2_lib-2021_0022, Assay - Neg_PCR_QC_lib-2021_0021, Assay - Neg_PCR_QC_lib-2021_0022, Assay - Neg_PCR_QC_lib-2021_0023, Assay - Neg_PCR_QC_lib-2021_0024
Snapshots: No snapshots
16s Amplicon assay of sample BAC 09.16
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Synergies between biological and ozonisation pr...
Organisms: No organisms
SOPs: No SOPs
Data files: Dataset: Bac_9-16_f.fastq.gz, Dataset: Bac_9-16_r.fastq.gz, Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L..., Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L...
Snapshots: No snapshots
16s Amplicon assay of sample BAC 09.16 sludge1
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Synergies between biological and ozonisation pr...
Organisms: No organisms
SOPs: No SOPs
Data files: Dataset: Bac_9-16_sludge_f.fastq.gz, Dataset: Bac_9-16_sludge_r.fastq.gz, Dataset: D2021_0024_MERGED_1.fq.gz, Dataset: D2021_0024_MERGED_2.fq.gz
Snapshots: No snapshots
16s Amplicon assay of sample BAC 09.16 sludge2
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Synergies between biological and ozonisation pr...
Organisms: No organisms
SOPs: No SOPs
Data files: Dataset: Bac_9-16_II_sludge_f.fastq.gz, Dataset: Bac_9-16_II_sludge_r.fastq.gz, Dataset: D2021_0024_MERGED_1.fq.gz, Dataset: D2021_0024_MERGED_2.fq.gz
Snapshots: No snapshots
16s Amplicon assay of sample BAC 09.17
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Synergies between biological and ozonisation pr...
Organisms: No organisms
SOPs: No SOPs
Data files: Dataset: Bac_9-17_f.fastq.gz, Dataset: Bac_9-17_r.fastq.gz, Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L..., Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L...
Snapshots: No snapshots
16s Amplicon assay of sample BAC 09.18
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Synergies between biological and ozonisation pr...
Organisms: No organisms
SOPs: No SOPs
Data files: Dataset: Bac_9-18_f.fastq.gz, Dataset: Bac_9-18_r.fastq.gz, Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L..., Dataset: D20210022_FDDP210180294-1a_H73WNDSX2_L...
Snapshots: No snapshots
demultiplexed reverse file
Creators: None
Submitter: Jasper Koehorst
Investigations: Synergies between biological and ozonisation pr...
Studies: Optimizing condutions using bioreactors
Assays: Assay - Neg_PCR_QC_lib-2021_0024
demultiplexed forward file
Creators: None
Submitter: Jasper Koehorst
Investigations: Synergies between biological and ozonisation pr...
Studies: Optimizing condutions using bioreactors
Assays: Assay - Neg_PCR_QC_lib-2021_0024
demultiplexed reverse file
Creators: None
Submitter: Jasper Koehorst
Investigations: Synergies between biological and ozonisation pr...
Studies: Optimizing condutions using bioreactors
Assays: Assay - Neg_PCR_QC_lib-2021_0023
demultiplexed forward file
Creators: None
Submitter: Jasper Koehorst
Investigations: Synergies between biological and ozonisation pr...
Studies: Optimizing condutions using bioreactors
Assays: Assay - Neg_PCR_QC_lib-2021_0023
demultiplexed reverse file
Creators: None
Submitter: Jasper Koehorst
Investigations: Synergies between biological and ozonisation pr...
We have been running three types of bioreactors (BAC, SF and MBBR) at different feed flow speeds (0.25 - 4 L / h) for several months, while monitoring several parameters related to the effluent organic matter (TOC, UV254 absorbance and COD), oxygen and nutrient concentrations in the water
We have been running three types of bioreactors (BAC, SF and MBBR) at different feed flow speeds (0.25 - 4 L / h) for several months, while monitoring several parameters related to the effluent organic matter (TOC, UV254 absorbance and COD), oxygen and nutrient concentrations in the water