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Created: 7th Mar 2025 at 14:04

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Version 1 (earliest) Created 7th Mar 2025 at 14:04 by Munazah Andrabi
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Projects: Test: An inventory of the aspergillus secretome, Workshop fair data station example, An inventory of the Aspergillus niger secretome, Test, PichiaTest, Project: An inventory of the Aspergillus niger secretome
Web page: Not specified
Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. We were able to improve the in silico inventory of Aspergillus niger secretory proteins by combining different gene-model predictions from neighbouring Aspergilli and thereby avoiding prediction conflicts associated with inaccurate gene-models. An experimental ...
Programme: IBISBA Workshop
Public web page: Not specified
Start date: 7th Mar 2025
End date: 7th Mar 2028
Organisms: Aspergillus niger
An experimental validation of the predicted proteome confirmed in silico predictions.
Snapshots: No snapshots
Submitter: Munazah Andrabi
Investigation: Understanding the extracellular environment in ...
Assays: Signal Peptide Predictions
Snapshots: No snapshots
Submitter: Munazah Andrabi
Assay type: Protein-Protein Interaction Profiling
Technology type: Affinity Chromatography
Investigation: Understanding the extracellular environment in ...
Study: In silico prediction
Organisms: No organisms
SOPs: No SOPs
Data files: Mass Spec, demo: Samples used for the Aspergillus Niger ex...
Snapshots: No snapshots
Type: demo:Samples used for the Aspergillus Niger experiments
Creators: None
Submitter: Munazah Andrabi
Type: demo:Samples used for the Aspergillus Niger experiments
Creators: None
Submitter: Munazah Andrabi
Type: demo:Samples used for the Aspergillus Niger experiments
Creators: None
Submitter: Munazah Andrabi
Type: demo:Samples used for the Aspergillus Niger experiments
Creators: None
Submitter: Munazah Andrabi
Type: demo:Samples used for the Aspergillus Niger experiments
Creators: None
Submitter: Munazah Andrabi